PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 224aa    MW: 23717 Da    PI: 6.7015
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.8e-41151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++pe++r da+ s+++eA+ar+rdP+yG+v++i +lqqq+ +l++el
  XP_013610225.1  15 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQHVPEHKRADAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTEL 109
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++++++
  XP_013610225.1 110 SYVQAH 115
                     **9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6514116IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4015113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSSASPSSS CGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL  60
LQHVPEHKRA DAVVSICFEA QARLRDPIYG CVSHIVSLQQ QVVSLQTELS YVQAHLATLE  120
LPQPPPAPVT SSGSPPPLSI LDLPTITPSL YELSPIFEPM SSTWTMQQQP RPFDHLFDVP  180
SSSTIGGSSE LQALARDFLH GGQIPADLPP PGTGGSAPTV VKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610225.11e-162PREDICTED: LOB domain-containing protein 30
SwissprotO813231e-116LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0D3DZK81e-162A0A0D3DZK8_BRAOL; Uncharacterized protein
STRINGBra037323.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-100LBD family protein